WormBase Tree Display for CDS: PPA06915
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| PPA06915 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (34) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S139-21.43 | ||
| DB_remark | PPA-SEDL-1 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF00085 (Thioredoxin), PF01679 (Proteolipid membrane potential modulator), PF04628 (Sedlin, N-terminal conserved region); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR000612 (Proteolipid membrane potential modulator), IPR013766 (Thioredoxin domain), IPR000719 (Protein kinase domain), IPR011012 (Longin-like domain superfamily), IPR006722 (Trafficking protein particle complex subunit 2), IPR036249 (Thioredoxin-like superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00096469 | ||||
| Corresponding_transcript | PPA06915.1 | |||||
| Corresponding_protein | PP63056 | |||||
| Corresponding_oligo_set (12) | ||||||
| Microarray_results (12) | ||||||
| RNASeq_FPKM | WBls:0000032 | 6.92624 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 10.2242 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S139-21.43 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
