WormBase Tree Display for CDS: PPA06922
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| PPA06922 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrI | |||
| Structure | Source_exons (14) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S139-22.64 | ||
| DB_remark | contains similarity to Pfam domains PF00441 (Acyl-CoA dehydrogenase, C-terminal domain), PF02770 (Acyl-CoA dehydrogenase, middle domain), PF02771 (Acyl-CoA dehydrogenase, N-terminal domain); contains similarity to Interpro domains IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase, C-terminal), IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00096476 | ||||
| Corresponding_transcript | PPA06922.1 | |||||
| Corresponding_protein | PP75107 | |||||
| Corresponding_oligo_set | GPL14372_Probes_54515 | |||||
| GPL14372_Probes_54516 | ||||||
| GPL14372_Probes_54517 | ||||||
| GPL14372_Probes_54518 | ||||||
| Matching_cDNA | FE932067 | Inferred_automatically | transcript_builder.pl | |||
| FE931798 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_54515 | |||||
| GPL14372_Probes_54516 | ||||||
| GPL14372_Probes_54517 | ||||||
| GPL14372_Probes_54518 | ||||||
| RNASeq_FPKM | WBls:0000032 | 5.28848 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 21.8611 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 22 Jul 2019 16:55:36 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S139-22.64 | Curator_confirmed | WBPerson4055 | |||
| [190722 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
