WormBase Tree Display for CDS: PPA06929
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PPA06929 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (39) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-22.58 | ||
DB_remark | contains similarity to Pfam domains PF00005 (ABC transporter), PF00664 (ABC transporter transmembrane region); contains similarity to Interpro domains IPR030244 (), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR003439 (ABC transporter-like, ATP-binding domain), IPR036640 (ABC transporter type 1, transmembrane domain superfamily), IPR003593 (AAA+ ATPase domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00096483 | ||||
Corresponding_transcript | PPA06929.1 | |||||
Corresponding_protein | PP70586 | |||||
Corresponding_oligo_set | GPL14372_Probes_54498 | |||||
GPL14372_Probes_54499 | ||||||
GPL14372_Probes_9182 | ||||||
GPL14372_Probes_9183 | ||||||
GPL14372_Probes_9185 | ||||||
GPL14372_Probes_9186 | ||||||
GPL14372_Probes_9187 | ||||||
Microarray_results | GPL14372_Probes_9182 | |||||
GPL14372_Probes_9183 | ||||||
GPL14372_Probes_9185 | ||||||
GPL14372_Probes_9186 | ||||||
GPL14372_Probes_9187 | ||||||
GPL14372_Probes_54498 | ||||||
GPL14372_Probes_54499 | ||||||
RNASeq_FPKM | WBls:0000032 | 0.815295 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.9256 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-22.58 | Curator_confirmed | WBPerson4055 | |||
Method | curated |