WormBase Tree Display for CDS: PPA06953
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PPA06953 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 93 | |||
344 | 445 | |||||
699 | 784 | |||||
1009 | 1122 | |||||
5549 | 5679 | |||||
5843 | 5930 | |||||
6111 | 6175 | |||||
6355 | 6446 | |||||
6630 | 6723 | |||||
6954 | 7054 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-23.33 | ||
DB_remark | contains similarity to Pfam domain PF00782 (Dual specificity phosphatase, catalytic domain); contains similarity to Interpro domains IPR020422 (Dual specificity protein phosphatase domain), IPR029021 (Protein-tyrosine phosphatase-like), IPR016278 (Dual specificity protein phosphatase 12), IPR000340 (Dual specificity phosphatase, catalytic domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00096507 | ||||
Corresponding_transcript | PPA06953.1 | |||||
Corresponding_protein | PP68865 | |||||
Corresponding_oligo_set | GPL14372_Probes_54444 | |||||
GPL14372_Probes_9171 | ||||||
GPL14372_Probes_9173 | ||||||
GPL14372_Probes_9174 | ||||||
Matching_cDNA | FE935334 | Inferred_automatically | transcript_builder.pl | |||
FG104681 | Inferred_automatically | transcript_builder.pl | ||||
FG102400 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_9171 | |||||
GPL14372_Probes_9173 | ||||||
GPL14372_Probes_9174 | ||||||
GPL14372_Probes_54444 | ||||||
RNASeq_FPKM | WBls:0000032 | 56.9671 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 22.429 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-23.33 | Curator_confirmed | WBPerson4055 | |||
Method | curated |