WormBase Tree Display for CDS: PPA06990
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PPA06990 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (45) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-25.30 | ||
DB_remark | PPA-CPG-2 protein; contains similarity to Pfam domains PF00125 (Core histone H2A/H2B/H3/H4), PF01607 (Chitin binding Peritrophin-A domain), PF10712 (NAD-specific glutamate dehydrogenase); contains similarity to Interpro domains IPR036508 (Chitin binding domain superfamily), IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold), IPR000558 (Histone H2B), IPR007125 (Histone H2A/H2B/H3), IPR001951 (Histone H4), IPR019651 (Glutamate dehydrogenase, NAD-specific), IPR002557 (Chitin binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00096544 | ||||
Corresponding_transcript | PPA06990.1 | |||||
Corresponding_protein | PP72139 | |||||
Corresponding_oligo_set | GPL14372_Probes_54369 | |||||
GPL14372_Probes_54370 | ||||||
GPL14372_Probes_54371 | ||||||
GPL14372_Probes_54372 | ||||||
GPL14372_Probes_54373 | ||||||
GPL14372_Probes_9133 | ||||||
GPL14372_Probes_9137 | ||||||
GPL14372_Probes_9138 | ||||||
Matching_cDNA | AW052571 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_9133 | |||||
GPL14372_Probes_9137 | ||||||
GPL14372_Probes_9138 | ||||||
GPL14372_Probes_54369 | ||||||
GPL14372_Probes_54370 | ||||||
GPL14372_Probes_54371 | ||||||
GPL14372_Probes_54372 | ||||||
GPL14372_Probes_54373 | ||||||
RNASeq_FPKM | WBls:0000032 | 1.30773 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.08864 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-25.30 | Curator_confirmed | WBPerson4055 | |||
Method | curated |