Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: PPA06990

expand all nodes | collapse all nodes | view schema

Name Class

PPA06990SMapS_parentSequencePPA_ChrI
StructureSource_exons (45)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S139-25.30
DB_remarkPPA-CPG-2 protein; contains similarity to Pfam domains PF00125 (Core histone H2A/H2B/H3/H4), PF01607 (Chitin binding Peritrophin-A domain), PF10712 (NAD-specific glutamate dehydrogenase); contains similarity to Interpro domains IPR036508 (Chitin binding domain superfamily), IPR000164 (Histone H3/CENP-A), IPR009072 (Histone-fold), IPR000558 (Histone H2B), IPR007125 (Histone H2A/H2B/H3), IPR001951 (Histone H4), IPR019651 (Glutamate dehydrogenase, NAD-specific), IPR002557 (Chitin binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00096544
Corresponding_transcriptPPA06990.1
Corresponding_proteinPP72139
Corresponding_oligo_setGPL14372_Probes_54369
GPL14372_Probes_54370
GPL14372_Probes_54371
GPL14372_Probes_54372
GPL14372_Probes_54373
GPL14372_Probes_9133
GPL14372_Probes_9137
GPL14372_Probes_9138
Matching_cDNAAW052571Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_9133
GPL14372_Probes_9137
GPL14372_Probes_9138
GPL14372_Probes_54369
GPL14372_Probes_54370
GPL14372_Probes_54371
GPL14372_Probes_54372
GPL14372_Probes_54373
RNASeq_FPKMWBls:00000321.30773From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.08864From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S139-25.30Curator_confirmedWBPerson4055
Methodcurated