WormBase Tree Display for CDS: PPA07000
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PPA07000 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 57 | |||
102 | 326 | |||||
462 | 578 | |||||
838 | 905 | |||||
1287 | 1382 | |||||
1506 | 1609 | |||||
1704 | 1739 | |||||
1817 | 1944 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-26.29 | ||
DB_remark | contains similarity to Pfam domain PF00335 (Tetraspanin family); contains similarity to Interpro domains IPR018499 (Tetraspanin/Peripherin), IPR008952 (Tetraspanin, EC2 domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00096554 | ||||
Corresponding_transcript | PPA07000.1 | |||||
Corresponding_protein | PP59912 | |||||
Corresponding_oligo_set | GPL14372_Probes_54354 | |||||
GPL14372_Probes_9119 | ||||||
GPL14372_Probes_9120 | ||||||
GPL14372_Probes_9121 | ||||||
Microarray_results | GPL14372_Probes_9119 | |||||
GPL14372_Probes_9120 | ||||||
GPL14372_Probes_9121 | ||||||
GPL14372_Probes_54354 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 12.142 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-26.29 | Curator_confirmed | WBPerson4055 | |||
Method | curated |