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WormBase Tree Display for CDS: PPA07001

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Name Class

PPA07001SMapS_parentSequencePPA_ChrI
StructureSource_exons (29)
DB_infoDatabasepristionchus.orgcdsgene-UMA-S139-26.5
DB_remarkcontains similarity to Pfam domain PF02171 (Piwi domain); contains similarity to Interpro domains IPR036085 (PAZ domain superfamily), IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR003165 (Piwi domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00096555
Corresponding_transcriptPPA07001.1
Corresponding_proteinPP65071
Corresponding_oligo_setGPL14372_Probes_54349
GPL14372_Probes_54351
GPL14372_Probes_54352
Matching_cDNAEB184536Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_54349
GPL14372_Probes_54351
GPL14372_Probes_54352
RNASeq_FPKMWBls:00000323.61885From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010114.2456From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMA-S139-26.5Curator_confirmedWBPerson4055
Methodcurated