WormBase Tree Display for CDS: PPA07031
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| PPA07031 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (12) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S139-28.72 | ||
| TREEFAM | TREEFAM_ID | TF314948 | ||||
| DB_remark | PPA-CPF-2 protein; contains similarity to Pfam domains PF00076 (RNA recognition motif), PF14304 (Transcription termination and cleavage factor C-terminal), PF14327 (Hinge domain of cleavage stimulation factor subunit 2); contains similarity to Interpro domains IPR026896 (Transcription termination and cleavage factor, C-terminal domain), IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR038192 (Transcription termination and cleavage factor, C-terminal domain superfamily), IPR000504 (RNA recognition motif domain), IPR025742 (Cleavage stimulation factor subunit 2, hinge domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00096585 | ||||
| Corresponding_transcript | PPA07031.1 | |||||
| Corresponding_protein | PP20029 | |||||
| Corresponding_oligo_set | GPL14372_Probes_54282 | |||||
| GPL14372_Probes_54283 | ||||||
| Matching_cDNA | AW114534 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_54282 | |||||
| GPL14372_Probes_54283 | ||||||
| RNASeq_FPKM | WBls:0000032 | 3.87993 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S139-28.72 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
