WormBase Tree Display for CDS: PPA07042
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PPA07042 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (62) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S139-28.112 | ||
DB_remark | contains similarity to Pfam domains PF03215 (Rad17 P-loop domain), PF06814 (Lung seven transmembrane receptor); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR009637 (Transmembrane protein GPR107/GPR108-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00096596 | ||||
Corresponding_transcript | PPA07042.1 | |||||
Corresponding_protein | PP60388 | |||||
Corresponding_oligo_set | GPL14372_Probes_54254 | |||||
GPL14372_Probes_54255 | ||||||
GPL14372_Probes_54256 | ||||||
Microarray_results | GPL14372_Probes_54254 | |||||
GPL14372_Probes_54255 | ||||||
GPL14372_Probes_54256 | ||||||
RNASeq_FPKM | WBls:0000032 | 0.654662 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.5462 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S139-28.112 | Curator_confirmed | WBPerson4055 | |||
Method | curated |