WormBase Tree Display for CDS: PPA07075
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| PPA07075 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (31) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S7-99.7 | ||
| TREEFAM | TREEFAM_ID | TF106131 | ||||
| DB_remark | PPA-CPSF-2 protein; contains similarity to Pfam domains PF07521 (Zn-dependent metallo-hydrolase RNA specificity domain), PF10996 (Beta-Casp domain), PF13299 (Cleavage and polyadenylation factor 2 C-terminal), PF16661 (Metallo-beta-lactamase superfamily domain); contains similarity to Interpro domains IPR011108 (Zn-dependent metallo-hydrolase, RNA specificity domain), IPR036866 (Ribonuclease Z/Hydroxyacylglutathione hydrolase-like), IPR027075 (Cleavage and polyadenylation specificity factor subunit 2), IPR001279 (Metallo-beta-lactamase), IPR025069 (Cleavage and polyadenylation specificity factor 2, C-terminal), IPR022712 (Beta-Casp domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00096629 | ||||
| Corresponding_transcript | PPA07075.1 | |||||
| Corresponding_protein | PP60834 | |||||
| Corresponding_oligo_set | GPL14372_Probes_54217 | |||||
| Microarray_results | GPL14372_Probes_54217 | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 6.30596 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S7-99.7 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
