WormBase Tree Display for CDS: PPA07112
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PPA07112 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 70 | |||
303 | 443 | |||||
1115 | 1277 | |||||
1354 | 1369 | |||||
2042 | 2161 | |||||
2279 | 2803 | |||||
4188 | 4343 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-97.53 | ||
DB_remark | contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00096666 | ||||
Corresponding_transcript | PPA07112.1 | |||||
Corresponding_protein | PP61708 | |||||
Corresponding_oligo_set | GPL14372_Probes_8957 | |||||
GPL14372_Probes_8958 | ||||||
GPL14372_Probes_8959 | ||||||
GPL14372_Probes_8960 | ||||||
Microarray_results | GPL14372_Probes_8957 | |||||
GPL14372_Probes_8958 | ||||||
GPL14372_Probes_8959 | ||||||
GPL14372_Probes_8960 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-97.53 | Curator_confirmed | WBPerson4055 | |||
Method | curated |