WormBase Tree Display for CDS: PPA07260
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| PPA07260 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (34) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S233-17.45 | ||
| TREEFAM | TREEFAM_ID | TF105753 | ||||
| DB_remark | contains similarity to Pfam domains PF00264 (Common central domain of tyrosinase), PF00557 (Metallopeptidase family M24), PF15801 (zf-MYND-like zinc finger, mRNA-binding); contains similarity to Interpro domains IPR031615 (MYND-like zinc finger), IPR002467 (Peptidase M24A, methionine aminopeptidase, subfamily 1), IPR001714 (Peptidase M24, methionine aminopeptidase), IPR002227 (Tyrosinase copper-binding domain), IPR000994 (Peptidase M24), IPR008922 (Di-copper centre-containing domain superfamily), IPR036005 (Creatinase/aminopeptidase-like) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00096814 | ||||
| Corresponding_transcript | PPA07260.1 | |||||
| Corresponding_protein | PP67534 | |||||
| Corresponding_oligo_set | GPL14372_Probes_80041 | |||||
| GPL14372_Probes_80042 | ||||||
| GPL14372_Probes_80043 | ||||||
| GPL14372_Probes_80045 | ||||||
| GPL14372_Probes_80046 | ||||||
| GPL14372_Probes_80047 | ||||||
| GPL14372_Probes_80048 | ||||||
| GPL14372_Probes_80049 | ||||||
| GPL14372_Probes_80050 | ||||||
| GPL14372_Probes_80051 | ||||||
| Matching_cDNA | FG101242 | Inferred_automatically | transcript_builder.pl | |||
| FG098411 | Inferred_automatically | transcript_builder.pl | ||||
| FG097286 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_80041 | |||||
| GPL14372_Probes_80042 | ||||||
| GPL14372_Probes_80043 | ||||||
| GPL14372_Probes_80045 | ||||||
| GPL14372_Probes_80046 | ||||||
| GPL14372_Probes_80047 | ||||||
| GPL14372_Probes_80048 | ||||||
| GPL14372_Probes_80049 | ||||||
| GPL14372_Probes_80050 | ||||||
| GPL14372_Probes_80051 | ||||||
| RNASeq_FPKM | WBls:0000032 | 34.5099 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 4.93989 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S233-17.45 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
