WormBase Tree Display for CDS: PPA07286
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| PPA07286 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 114 | |||
| 272 | 355 | |||||
| 468 | 545 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S233-16.8 | ||
| DB_remark | contains similarity to Pfam domain PF15880 (NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial); contains similarity to Interpro domain IPR026193 (NADH-ubiquinone oxidoreductase flavoprotein 3) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00096840 | ||||
| Corresponding_transcript | PPA07286.1 | |||||
| Corresponding_protein | PP54193 | |||||
| Corresponding_oligo_set | GPL14372_Probes_80147 | |||||
| GPL14372_Probes_80148 | ||||||
| Matching_cDNA | FG103200 | Inferred_automatically | transcript_builder.pl | |||
| CO871126 | Inferred_automatically | transcript_builder.pl | ||||
| FG100495 | Inferred_automatically | transcript_builder.pl | ||||
| FG094957 | Inferred_automatically | transcript_builder.pl | ||||
| BM566160 | Inferred_automatically | transcript_builder.pl | ||||
| CO871188 | Inferred_automatically | transcript_builder.pl | ||||
| FG100670 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_80147 | |||||
| GPL14372_Probes_80148 | ||||||
| RNASeq_FPKM | WBls:0000032 | 37.6177 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 22.2379 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S233-16.8 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
