WormBase Tree Display for CDS: PPA07575
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PPA07575 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 291 | |||
610 | 687 | |||||
736 | 861 | |||||
1102 | 1211 | |||||
1414 | 1543 | |||||
2106 | 2240 | |||||
2363 | 2421 | |||||
3724 | 3892 | |||||
4140 | 4283 | |||||
4379 | 4459 | |||||
4544 | 4621 | |||||
4696 | 4830 | |||||
5406 | 5474 | |||||
5553 | 5689 | |||||
5820 | 5952 | |||||
6008 | 6097 | |||||
6224 | 6338 | |||||
6424 | 6509 | |||||
6627 | 6722 | |||||
7164 | 7293 | |||||
7343 | 7413 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S233-15.27 | ||
DB_remark | PPA-UNC-33 protein; contains similarity to Pfam domain PF01979 (Amidohydrolase family); contains similarity to Interpro domains IPR032466 (Metal-dependent hydrolase), IPR011059 (Metal-dependent hydrolase, composite domain superfamily), IPR006680 (Amidohydrolase-related) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00097129 | ||||
Corresponding_transcript | PPA07575.1 | |||||
Corresponding_protein | PP71750 | |||||
Corresponding_oligo_set | GPL14372_Probes_25741 | |||||
GPL14372_Probes_25742 | ||||||
GPL14372_Probes_25744 | ||||||
GPL14372_Probes_25745 | ||||||
GPL14372_Probes_25746 | ||||||
GPL14372_Probes_25747 | ||||||
GPL14372_Probes_25748 | ||||||
Microarray_results | GPL14372_Probes_25741 | |||||
GPL14372_Probes_25742 | ||||||
GPL14372_Probes_25744 | ||||||
GPL14372_Probes_25745 | ||||||
GPL14372_Probes_25746 | ||||||
GPL14372_Probes_25747 | ||||||
GPL14372_Probes_25748 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S233-15.27 | Curator_confirmed | WBPerson4055 | |||
Method | curated |