WormBase Tree Display for CDS: PPA07654
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PPA07654 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (23) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-32.58 | ||
TREEFAM | TREEFAM_ID | TF317380 | ||||
DB_remark | contains similarity to Pfam domains PF01545 (Cation efflux family), PF16916 (Dimerisation domain of Zinc Transporter); contains similarity to Interpro domains IPR002524 (Cation efflux protein), IPR027470 (Cation efflux protein, cytoplasmic domain), IPR036837 (Cation efflux protein, cytoplasmic domain superfamily), IPR027469 (Cation efflux transmembrane domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00097208 | ||||
Corresponding_transcript | PPA07654.1 | |||||
Corresponding_protein | PP64799 | |||||
Corresponding_oligo_set | GPL14372_Probes_69057 | |||||
Microarray_results | GPL14372_Probes_69057 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.99586 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-32.58 | Curator_confirmed | WBPerson4055 | |||
Method | curated |