WormBase Tree Display for CDS: PPA07705
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| PPA07705 | SMap | S_parent | Sequence | PPA_ChrIII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (31) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2864-7.60 | ||
| DB_remark | PPA-TPK-1.1 protein; contains similarity to Pfam domains PF02373 (JmjC domain, hydroxylase), PF04263 (Thiamin pyrophosphokinase, catalytic domain), PF04265 (Thiamin pyrophosphokinase, vitamin B1 binding domain); contains similarity to Interpro domains IPR007373 (Thiamin pyrophosphokinase, thiamin-binding domain), IPR036371 (Thiamin pyrophosphokinase, thiamin-binding domain superfamily), IPR003347 (JmjC domain), IPR036759 (Thiamin pyrophosphokinase, catalytic domain superfamily), IPR006282 (Thiamin pyrophosphokinase), IPR007371 (Thiamin pyrophosphokinase, catalytic domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00097259 | ||||
| Corresponding_transcript | PPA07705.1 | |||||
| Corresponding_protein | PP67334 | |||||
| Corresponding_oligo_set | GPL14372_Probes_4133 | |||||
| GPL14372_Probes_4134 | ||||||
| GPL14372_Probes_4136 | ||||||
| GPL14372_Probes_43187 | ||||||
| GPL14372_Probes_43188 | ||||||
| GPL14372_Probes_43189 | ||||||
| GPL14372_Probes_43190 | ||||||
| GPL14372_Probes_43191 | ||||||
| GPL14372_Probes_43192 | ||||||
| Microarray_results | GPL14372_Probes_4133 | |||||
| GPL14372_Probes_4134 | ||||||
| GPL14372_Probes_4136 | ||||||
| GPL14372_Probes_43187 | ||||||
| GPL14372_Probes_43188 | ||||||
| GPL14372_Probes_43189 | ||||||
| GPL14372_Probes_43190 | ||||||
| GPL14372_Probes_43191 | ||||||
| GPL14372_Probes_43192 | ||||||
| RNASeq_FPKM | WBls:0000032 | 5.77269 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S2864-7.60 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
