WormBase Tree Display for CDS: PPA08006
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PPA08006 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 126 | |||
562 | 695 | |||||
1062 | 1133 | |||||
1464 | 1503 | |||||
1980 | 2066 | |||||
3528 | 3593 | |||||
4547 | 4618 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S41-22.24 | ||
TREEFAM | TREEFAM_ID | TF312873 | ||||
DB_remark | contains similarity to Pfam domain PF04707 (PRELI-like family); contains similarity to Interpro domains IPR037365 (Slowmo/Ups family), IPR006797 (PRELI/MSF1 domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00097560 | ||||
Corresponding_transcript | PPA08006.1 | |||||
Corresponding_protein | PP52294 | |||||
Corresponding_oligo_set | GPL14372_Probes_86169 | |||||
Matching_cDNA | FG096847 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_86169 | |||||
RNASeq_FPKM | WBls:0000032 | 15.4748 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.14139 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S41-22.24 | Curator_confirmed | WBPerson4055 | |||
Method | curated |