WormBase Tree Display for CDS: PPA08057
expand all nodes | collapse all nodes | view schema
| PPA08057 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (63) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S278-12.97 | ||
| TREEFAM | TREEFAM_ID | TF316874 | ||||
| DB_remark | PPA-MIG-6 protein; contains similarity to Pfam domains PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain), PF00090 (Thrombospondin type 1 domain), PF05986 (ADAM-TS Spacer 1); contains similarity to Interpro domains IPR036383 (Thrombospondin type-1 (TSP1) repeat superfamily), IPR013273 (ADAMTS/ADAMTS-like), IPR010294 (ADAMTS/ADAMTS-like, Spacer 1), IPR036880 (Pancreatic trypsin inhibitor Kunitz domain superfamily), IPR000884 (Thrombospondin type-1 (TSP1) repeat), IPR002223 (Pancreatic trypsin inhibitor Kunitz domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00097611 | ||||
| Corresponding_transcript | PPA08057.1 | |||||
| Corresponding_protein | PP64689 | |||||
| Corresponding_oligo_set | GPL14372_Probes_43092 | |||||
| GPL14372_Probes_43094 | ||||||
| GPL14372_Probes_43095 | ||||||
| GPL14372_Probes_43096 | ||||||
| GPL14372_Probes_43098 | ||||||
| GPL14372_Probes_43099 | ||||||
| GPL14372_Probes_43100 | ||||||
| GPL14372_Probes_43101 | ||||||
| GPL14372_Probes_43102 | ||||||
| Matching_cDNA | EB184051 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_43092 | |||||
| GPL14372_Probes_43094 | ||||||
| GPL14372_Probes_43095 | ||||||
| GPL14372_Probes_43096 | ||||||
| GPL14372_Probes_43098 | ||||||
| GPL14372_Probes_43099 | ||||||
| GPL14372_Probes_43100 | ||||||
| GPL14372_Probes_43101 | ||||||
| GPL14372_Probes_43102 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.488729 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 2.88569 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S278-12.97 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
