WormBase Tree Display for CDS: PPA08073
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| PPA08073 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (12) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S278-12.21 | ||
| TREEFAM | TREEFAM_ID | TF317700 | ||||
| DB_remark | PPA-STI-1 protein; contains similarity to Pfam domains PF00515 (Tetratricopeptide repeat), PF13414 (TPR repeat), PF17830 (STI1/HOP, DP domain); contains similarity to Interpro domains IPR006636 (Heat shock chaperonin-binding), IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR041243 (STI1/HOP, DP domain), IPR001440 (Tetratricopeptide repeat 1) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00097627 | ||||
| Corresponding_transcript | PPA08073.1 | |||||
| Corresponding_protein | PP56203 | |||||
| Corresponding_oligo_set | GPL14372_Probes_43138 | |||||
| GPL14372_Probes_43140 | ||||||
| GPL14372_Probes_43142 | ||||||
| Matching_cDNA | AW114613 | Inferred_automatically | transcript_builder.pl | |||
| FE933587 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_43138 | |||||
| GPL14372_Probes_43140 | ||||||
| GPL14372_Probes_43142 | ||||||
| RNASeq_FPKM | WBls:0000032 | 110.353 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 43.4453 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S278-12.21 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
