WormBase Tree Display for CDS: PPA08189
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| PPA08189 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (23) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S394-2.88 | ||
| TREEFAM | TREEFAM_ID | TF351700 | ||||
| DB_remark | contains similarity to Pfam domains PF00057 (Low-density lipoprotein receptor domain class A), PF00058 (Low-density lipoprotein receptor repeat class B), PF07645 (Calcium-binding EGF domain); contains similarity to Interpro domains IPR036055 (LDL receptor-like superfamily), IPR000033 (LDLR class B repeat), IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR001881 (EGF-like calcium-binding domain), IPR011042 (Six-bladed beta-propeller, TolB-like), IPR000742 (EGF-like domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00097743 | ||||
| Corresponding_transcript | PPA08189.1 | |||||
| Corresponding_protein | PP60892 | |||||
| Corresponding_oligo_set | GPL14372_Probes_90414 | |||||
| Matching_cDNA | BQ087807 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_90414 | |||||
| RNASeq_FPKM | WBls:0000032 | 9.97712 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.92748 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S394-2.88 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
