WormBase Tree Display for CDS: PPA08207
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PPA08207 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 78 | |||
152 | 196 | |||||
270 | 355 | |||||
408 | 489 | |||||
949 | 1047 | |||||
1096 | 1137 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S394-1.12 | ||
TREEFAM | TREEFAM_ID | TF331873 | ||||
DB_remark | contains similarity to Pfam domain PF13905 (Thioredoxin-like); contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR036249 (Thioredoxin-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00097761 | ||||
Corresponding_transcript | PPA08207.1 | |||||
Corresponding_protein | PP68627 | |||||
Corresponding_oligo_set | GPL14372_Probes_90541 | |||||
GPL14372_Probes_90543 | ||||||
GPL14372_Probes_90544 | ||||||
Matching_cDNA | CO871228 | Inferred_automatically | transcript_builder.pl | |||
CN656875 | Inferred_automatically | transcript_builder.pl | ||||
BM812348 | Inferred_automatically | transcript_builder.pl | ||||
FG095393 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_90541 | |||||
GPL14372_Probes_90543 | ||||||
GPL14372_Probes_90544 | ||||||
RNASeq_FPKM | WBls:0000032 | 406.392 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 460.554 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S394-1.12 | Curator_confirmed | WBPerson4055 | |||
Method | curated |