WormBase Tree Display for CDS: PPA08250
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PPA08250 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (16) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S394-0.0 | ||
DB_remark | PPA-EGL-27 protein; contains similarity to Pfam domains PF00320 (GATA zinc finger), PF01448 (ELM2 domain); contains similarity to Interpro domains IPR000679 (Zinc finger, GATA-type), IPR000949 (ELM2 domain), IPR001005 (SANT/Myb domain), IPR009057 (Homeobox-like domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Start_not_found | 1 | |||||
End_not_found | ||||||
Visible | Gene | WBGene00097804 | ||||
Corresponding_transcript | PPA08250.1 | |||||
Corresponding_protein | PP58379 | |||||
Corresponding_oligo_set | GPL14372_Probes_90682 | |||||
GPL14372_Probes_90683 | ||||||
GPL14372_Probes_90684 | ||||||
GPL14372_Probes_90685 | ||||||
GPL14372_Probes_90686 | ||||||
GPL14372_Probes_90687 | ||||||
GPL14372_Probes_90688 | ||||||
Matching_cDNA | EB184012 | Inferred_automatically | transcript_builder.pl | |||
FE938092 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_90682 | |||||
GPL14372_Probes_90683 | ||||||
GPL14372_Probes_90684 | ||||||
GPL14372_Probes_90685 | ||||||
GPL14372_Probes_90686 | ||||||
GPL14372_Probes_90687 | ||||||
GPL14372_Probes_90688 | ||||||
RNASeq_FPKM | WBls:0000032 | 61.431 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 24.183 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S394-0.0 | Curator_confirmed | WBPerson4055 | |||
Method | curated |