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WormBase Tree Display for CDS: PPA08410

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Name Class

PPA08410SMapS_parentSequencePPA_ChrII
StructureSource_exons (16)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S10-57.17
DB_remarkPPA-VPS-24 protein; contains similarity to Pfam domains PF01693 (Caulimovirus viroplasmin), PF03357 (Snf7); contains similarity to Interpro domains IPR037056 (Ribonuclease H1, N-terminal domain superfamily), IPR009027 (Large ribosomal subunit protein bL9/RNase H1, N-terminal), IPR005024 (Snf7 family), IPR011320 (Ribonuclease H1, N-terminal)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00097964
Corresponding_transcriptPPA08410.1
Corresponding_proteinPP74244
Corresponding_oligo_setGPL14372_Probes_65494
GPL14372_Probes_65495
GPL14372_Probes_65498
Matching_cDNAAW114982Inferred_automaticallytranscript_builder.pl
FG104564Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_65494
GPL14372_Probes_65495
GPL14372_Probes_65498
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.11282From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S10-57.17Curator_confirmedWBPerson4055
Methodcurated