WormBase Tree Display for CDS: PPA08410
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PPA08410 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (16) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-57.17 | ||
DB_remark | PPA-VPS-24 protein; contains similarity to Pfam domains PF01693 (Caulimovirus viroplasmin), PF03357 (Snf7); contains similarity to Interpro domains IPR037056 (Ribonuclease H1, N-terminal domain superfamily), IPR009027 (Large ribosomal subunit protein bL9/RNase H1, N-terminal), IPR005024 (Snf7 family), IPR011320 (Ribonuclease H1, N-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00097964 | ||||
Corresponding_transcript | PPA08410.1 | |||||
Corresponding_protein | PP74244 | |||||
Corresponding_oligo_set | GPL14372_Probes_65494 | |||||
GPL14372_Probes_65495 | ||||||
GPL14372_Probes_65498 | ||||||
Matching_cDNA | AW114982 | Inferred_automatically | transcript_builder.pl | |||
FG104564 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_65494 | |||||
GPL14372_Probes_65495 | ||||||
GPL14372_Probes_65498 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.11282 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-57.17 | Curator_confirmed | WBPerson4055 | |||
Method | curated |