WormBase Tree Display for CDS: PPA08419
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| PPA08419 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (53) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S139-10.5 | ||
| DB_remark | PPA-CRB-1 protein; contains similarity to Pfam domains PF00008 (EGF-like domain), PF02210 (Laminin G domain), PF07645 (Calcium-binding EGF domain); contains similarity to Interpro domains IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR001881 (EGF-like calcium-binding domain), IPR009030 (Growth factor receptor cysteine-rich domain superfamily), IPR000742 (EGF-like domain), IPR001791 (Laminin G domain), IPR003645 (Follistatin-like, N-terminal) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00097973 | ||||
| Corresponding_transcript | PPA08419.1 | |||||
| Corresponding_protein | PP52173 | |||||
| Corresponding_oligo_set | GPL14372_Probes_88061 | |||||
| GPL14372_Probes_88063 | ||||||
| Microarray_results | GPL14372_Probes_88061 | |||||
| GPL14372_Probes_88063 | ||||||
| RNASeq_FPKM | WBls:0000032 | 3.21275 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.03517 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S139-10.5 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
