WormBase Tree Display for CDS: PPA08424
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PPA08424 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (11) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-10.42 | ||
TREEFAM | TREEFAM_ID | TF313769 | ||||
DB_remark | contains similarity to Pfam domain PF04140 (Isoprenylcysteine carboxyl methyltransferase (ICMT) family); contains similarity to Interpro domain IPR007269 (Isoprenylcysteine carboxyl methyltransferase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00097978 | ||||
Corresponding_transcript | PPA08424.1 | |||||
Corresponding_protein | PP58196 | |||||
Corresponding_oligo_set | GPL14372_Probes_88071 | |||||
GPL14372_Probes_88072 | ||||||
GPL14372_Probes_88073 | ||||||
Matching_cDNA | FG097927 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_88071 | |||||
GPL14372_Probes_88072 | ||||||
GPL14372_Probes_88073 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.28905 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-10.42 | Curator_confirmed | WBPerson4055 | |||
Method | curated |