WormBase Tree Display for CDS: PPA08436
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PPA08436 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-10.7 | ||
TREEFAM | TREEFAM_ID | TF324895 | ||||
DB_remark | PPA-MPDU-1 protein; contains similarity to Pfam domains PF04193 (PQ loop repeat), PF10171 (Translocase of the Inner Mitochondrial membrane 29); contains similarity to Interpro domains IPR019322 (Mitochondrial import inner membrane translocase subunit Tim29), IPR006603 (PQ-loop repeat), IPR016817 (Mannose-P-dolichol utilization defect 1 protein) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00097990 | ||||
Corresponding_transcript | PPA08436.1 | |||||
Corresponding_protein | PP63652 | |||||
Corresponding_oligo_set | GPL14372_Probes_88088 | |||||
GPL14372_Probes_88090 | ||||||
GPL14372_Probes_88091 | ||||||
GPL14372_Probes_88092 | ||||||
Matching_cDNA | FG104813 | Inferred_automatically | transcript_builder.pl | |||
FG098801 | Inferred_automatically | transcript_builder.pl | ||||
FE935157 | Inferred_automatically | transcript_builder.pl | ||||
FG103111 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_88088 | |||||
GPL14372_Probes_88090 | ||||||
GPL14372_Probes_88091 | ||||||
GPL14372_Probes_88092 | ||||||
RNASeq_FPKM | WBls:0000032 | 17.4658 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 17.6812 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-10.7 | Curator_confirmed | WBPerson4055 | |||
Method | curated |