WormBase Tree Display for CDS: PPA08744
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PPA08744 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (20) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S7-91.17 | ||
DB_remark | PPA-BCA-1 protein; contains similarity to Pfam domains PF00071 (Ras family), PF00484 (Carbonic anhydrase); contains similarity to Interpro domains IPR001806 (Small GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR036874 (Carbonic anhydrase superfamily), IPR001765 (Carbonic anhydrase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00098298 | ||||
Corresponding_transcript | PPA08744.1 | |||||
Corresponding_protein | PP73790 | |||||
Corresponding_oligo_set | GPL14372_Probes_74326 | |||||
GPL14372_Probes_74328 | ||||||
GPL14372_Probes_74329 | ||||||
Matching_cDNA | FG100705 | Inferred_automatically | transcript_builder.pl | |||
FG098717 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_74326 | |||||
GPL14372_Probes_74328 | ||||||
GPL14372_Probes_74329 | ||||||
RNASeq_FPKM | WBls:0000032 | 10.8861 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S7-91.17 | Curator_confirmed | WBPerson4055 | |||
Method | curated |