WormBase Tree Display for CDS: PPA08759
expand all nodes | collapse all nodes | view schema
PPA08759 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (39) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-92.22 | ||
DB_remark | contains similarity to Pfam domains PF00250 (Forkhead domain), PF00856 (SET domain); contains similarity to Interpro domains IPR001214 (SET domain), IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR001766 (Fork head domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00098313 | ||||
Corresponding_transcript | PPA08759.1 | |||||
Corresponding_protein | PP70702 | |||||
Corresponding_oligo_set | GPL14372_Probes_74310 | |||||
GPL14372_Probes_74311 | ||||||
GPL14372_Probes_74314 | ||||||
Microarray_results | GPL14372_Probes_74310 | |||||
GPL14372_Probes_74311 | ||||||
GPL14372_Probes_74314 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.54951 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-92.22 | Curator_confirmed | WBPerson4055 | |||
Method | curated |