WormBase Tree Display for CDS: PPA08831
expand all nodes | collapse all nodes | view schema
PPA08831 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S296-0.10 | ||
DB_remark | PPA-ZTF-22.2 protein; contains similarity to Pfam domain PF01090 (Ribosomal protein S19e); contains similarity to Interpro domains IPR038111 (), IPR036390 (Winged helix DNA-binding domain superfamily), IPR001266 (Small ribosomal subunit protein eS19), IPR013087 (Zinc finger C2H2-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00098385 | ||||
Corresponding_transcript | PPA08831.1 | |||||
Corresponding_protein | PP61709 | |||||
Corresponding_oligo_set | GPL14372_Probes_57911 | |||||
Microarray_results | GPL14372_Probes_57911 | |||||
RNASeq_FPKM | WBls:0000032 | 4.65573 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 6.87326 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S296-0.10 | Curator_confirmed | WBPerson4055 | |||
Method | curated |