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WormBase Tree Display for CDS: PPA09083

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Name Class

PPA09083SMapS_parentSequencePPA_ChrII
StructureSource_exons1703
772892
15512876
42726816
DB_infoDatabasepristionchus.orgcdsgene-UMM-S41-19.81
DB_remarkcontains similarity to Pfam domains PF00665 (Integrase core domain), PF17921 (Integrase zinc binding domain); contains similarity to Interpro domains IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR001878 (Zinc finger, CCHC-type), IPR021109 (Aspartic peptidase domain superfamily), IPR001584 (Integrase, catalytic core), IPR036875 (Zinc finger, CCHC-type superfamily), IPR041588 (Integrase zinc-binding domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
Start_not_found1
VisibleGeneWBGene00098637
Corresponding_transcriptPPA09083.1
Corresponding_proteinPP54042
Corresponding_oligo_setGPL14372_Probes_35085
Microarray_resultsGPL14372_Probes_35085
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S41-19.81Curator_confirmedWBPerson4055
Methodcurated