WormBase Tree Display for CDS: PPA09083
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PPA09083 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 703 | |||
772 | 892 | |||||
1551 | 2876 | |||||
4272 | 6816 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S41-19.81 | ||
DB_remark | contains similarity to Pfam domains PF00665 (Integrase core domain), PF17921 (Integrase zinc binding domain); contains similarity to Interpro domains IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR001878 (Zinc finger, CCHC-type), IPR021109 (Aspartic peptidase domain superfamily), IPR001584 (Integrase, catalytic core), IPR036875 (Zinc finger, CCHC-type superfamily), IPR041588 (Integrase zinc-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00098637 | ||||
Corresponding_transcript | PPA09083.1 | |||||
Corresponding_protein | PP54042 | |||||
Corresponding_oligo_set | GPL14372_Probes_35085 | |||||
Microarray_results | GPL14372_Probes_35085 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S41-19.81 | Curator_confirmed | WBPerson4055 | |||
Method | curated |