WormBase Tree Display for CDS: PPA09130
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PPA09130 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (48) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-84.72 | ||
TREEFAM | TREEFAM_ID | TF313804 | ||||
DB_remark | contains similarity to Pfam domains PF12894 (Anaphase-promoting complex subunit 4 WD40 domain), PF13911 (AhpC/TSA antioxidant enzyme); contains similarity to Interpro domains IPR032801 (Peroxiredoxin-like 2A/B/C), IPR024977 (Anaphase-promoting complex subunit 4-like, WD40 domain), IPR036322 (WD40-repeat-containing domain superfamily), IPR036249 (Thioredoxin-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00098684 | ||||
Corresponding_transcript | PPA09130.1 | |||||
Corresponding_protein | PP64851 | |||||
Corresponding_oligo_set (13) | ||||||
Matching_cDNA | AI989119 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (13) | ||||||
RNASeq_FPKM | WBls:0000032 | 1.42927 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.2196 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-84.72 | Curator_confirmed | WBPerson4055 | |||
Method | curated |