WormBase Tree Display for CDS: PPA09178
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PPA09178 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (39) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-87.3 | ||
TREEFAM | TREEFAM_ID | TF313564 | ||||
DB_remark | PPA-CYSL-2 protein; contains similarity to Pfam domains PF00291 (Pyridoxal-phosphate dependent enzyme), PF07942 (Carnosine N-methyltransferase); contains similarity to Interpro domains IPR005856 (Cysteine synthase), IPR005859 (Cysteine synthase CysK), IPR036052 (Tryptophan synthase beta chain-like, PALP domain superfamily), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR001926 (Tryptophan synthase beta chain-like, PALP domain), IPR012901 (Carnosine N-methyltransferase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00098732 | ||||
Corresponding_transcript | PPA09178.1 | |||||
Corresponding_protein | PP73422 | |||||
Corresponding_oligo_set (13) | ||||||
Matching_cDNA (16) | ||||||
Microarray_results (13) | ||||||
RNASeq_FPKM | WBls:0000032 | 23.3713 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 24 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-87.3 | Curator_confirmed | WBPerson4055 | |||
Method | curated |