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WormBase Tree Display for CDS: PPA09178

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Name Class

PPA09178SMapS_parentSequencePPA_ChrII
StructureSource_exons (39)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S10-87.3
TREEFAMTREEFAM_IDTF313564
DB_remarkPPA-CYSL-2 protein; contains similarity to Pfam domains PF00291 (Pyridoxal-phosphate dependent enzyme), PF07942 (Carnosine N-methyltransferase); contains similarity to Interpro domains IPR005856 (Cysteine synthase), IPR005859 (Cysteine synthase CysK), IPR036052 (Tryptophan synthase beta chain-like, PALP domain superfamily), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase superfamily), IPR001926 (Tryptophan synthase beta chain-like, PALP domain), IPR012901 (Carnosine N-methyltransferase)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00098732
Corresponding_transcriptPPA09178.1
Corresponding_proteinPP73422
Corresponding_oligo_set (13)
Matching_cDNA (16)
Microarray_results (13)
RNASeq_FPKMWBls:000003223.3713From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010124From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S10-87.3Curator_confirmedWBPerson4055
Methodcurated