WormBase Tree Display for CDS: PPA09179
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| PPA09179 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (20) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-87.4 | ||
| TREEFAM | TREEFAM_ID | TF316784 | ||||
| DB_remark | contains similarity to Pfam domain PF00291 (Pyridoxal-phosphate dependent enzyme); contains similarity to Interpro domains IPR005856 (Cysteine synthase), IPR005859 (Cysteine synthase CysK), IPR036052 (Tryptophan synthase beta chain-like, PALP domain superfamily), IPR001926 (Tryptophan synthase beta chain-like, PALP domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00098733 | ||||
| Corresponding_transcript | PPA09179.1 | |||||
| Corresponding_protein | PP55292 | |||||
| Corresponding_oligo_set | GPL14372_Probes_15739 | |||||
| GPL14372_Probes_15741 | ||||||
| GPL14372_Probes_15743 | ||||||
| GPL14372_Probes_63731 | ||||||
| GPL14372_Probes_63732 | ||||||
| GPL14372_Probes_63733 | ||||||
| GPL14372_Probes_63734 | ||||||
| Matching_cDNA (11) | ||||||
| Microarray_results | GPL14372_Probes_15739 | |||||
| GPL14372_Probes_15741 | ||||||
| GPL14372_Probes_15743 | ||||||
| GPL14372_Probes_63731 | ||||||
| GPL14372_Probes_63732 | ||||||
| GPL14372_Probes_63733 | ||||||
| GPL14372_Probes_63734 | ||||||
| RNASeq_FPKM | WBls:0000032 | 16.2754 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 23.0653 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-87.4 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
