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WormBase Tree Display for CDS: PPA09391

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Name Class

PPA09391SMapS_parentSequencePPA_ChrI
StructureSource_exons (42)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2844-42.51
DB_remarkcontains similarity to Pfam domains PF00023 (Ankyrin repeat), PF06816 (NOTCH protein), PF07645 (Calcium-binding EGF domain), PF07684 (NOTCH protein), PF13857 (Ankyrin repeats (many copies)); contains similarity to Interpro domains IPR011656 (Notch, NODP domain), IPR002110 (Ankyrin repeat), IPR001881 (EGF-like calcium-binding domain), IPR000742 (EGF-like domain), IPR036770 (Ankyrin repeat-containing domain superfamily), IPR010660 (Notch, NOD domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00098945
Corresponding_transcriptPPA09391.1
Corresponding_proteinPP67424
Corresponding_oligo_set (13)
Microarray_results (13)
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2844-42.51Curator_confirmedWBPerson4055
Methodcurated