WormBase Tree Display for CDS: PPA09391
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PPA09391 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (42) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-42.51 | ||
DB_remark | contains similarity to Pfam domains PF00023 (Ankyrin repeat), PF06816 (NOTCH protein), PF07645 (Calcium-binding EGF domain), PF07684 (NOTCH protein), PF13857 (Ankyrin repeats (many copies)); contains similarity to Interpro domains IPR011656 (Notch, NODP domain), IPR002110 (Ankyrin repeat), IPR001881 (EGF-like calcium-binding domain), IPR000742 (EGF-like domain), IPR036770 (Ankyrin repeat-containing domain superfamily), IPR010660 (Notch, NOD domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00098945 | ||||
Corresponding_transcript | PPA09391.1 | |||||
Corresponding_protein | PP67424 | |||||
Corresponding_oligo_set (13) | ||||||
Microarray_results (13) | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-42.51 | Curator_confirmed | WBPerson4055 | |||
Method | curated |