WormBase Tree Display for CDS: PPA09403
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| PPA09403 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 78 | |||
| 166 | 269 | |||||
| 557 | 620 | |||||
| 945 | 989 | |||||
| 1243 | 1341 | |||||
| 1755 | 1838 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S2844-42.2 | ||
| TREEFAM | TREEFAM_ID | TF312921 | ||||
| DB_remark | PPA-APS-1 protein; contains similarity to Pfam domain PF01217 (Clathrin adaptor complex small chain); contains similarity to Interpro domains IPR022775 (AP complex, mu/sigma subunit), IPR016635 (Adaptor protein complex, sigma subunit), IPR011012 (Longin-like domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00098957 | ||||
| Corresponding_transcript | PPA09403.1 | |||||
| Corresponding_protein | PP23169 | |||||
| Corresponding_oligo_set | GPL14372_Probes_91169 | |||||
| GPL14372_Probes_91171 | ||||||
| GPL14372_Probes_91172 | ||||||
| GPL14372_Probes_91173 | ||||||
| Matching_cDNA | FG096393 | Inferred_automatically | transcript_builder.pl | |||
| FG097868 | Inferred_automatically | transcript_builder.pl | ||||
| FG099668 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_91169 | |||||
| GPL14372_Probes_91171 | ||||||
| GPL14372_Probes_91172 | ||||||
| GPL14372_Probes_91173 | ||||||
| RNASeq_FPKM | WBls:0000032 | 97.3946 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 69.035 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S2844-42.2 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
