WormBase Tree Display for CDS: PPA09444
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| PPA09444 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (12) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S2844-40.3 | ||
| TREEFAM | TREEFAM_ID | TF313680 | ||||
| DB_remark | PPA-AHSA-1 protein; contains similarity to Pfam domains PF08327 (Activator of Hsp90 ATPase homolog 1-like protein), PF09229 (Activator of Hsp90 ATPase, N-terminal); contains similarity to Interpro domains IPR039981 (), IPR023393 (START-like domain superfamily), IPR036338 (Activator of Hsp90 ATPase, Aha1), IPR013538 (Activator of Hsp90 ATPase homologue 1-like, C-terminal), IPR015310 (Activator of Hsp90 ATPase AHSA1-like, N-terminal) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00098998 | ||||
| Corresponding_transcript | PPA09444.1 | |||||
| Corresponding_protein | PP64858 | |||||
| Corresponding_oligo_set | GPL14372_Probes_91080 | |||||
| GPL14372_Probes_91081 | ||||||
| GPL14372_Probes_91082 | ||||||
| GPL14372_Probes_91083 | ||||||
| Matching_cDNA | AA193881 | Inferred_automatically | transcript_builder.pl | |||
| FG096897 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_91080 | |||||
| GPL14372_Probes_91081 | ||||||
| GPL14372_Probes_91082 | ||||||
| GPL14372_Probes_91083 | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.94302 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 27.8077 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S2844-40.3 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
