WormBase Tree Display for CDS: PPA09521
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| PPA09521 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (37) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-35.35 | ||
| TREEFAM | TREEFAM_ID | TF105695 | ||||
| DB_remark | PPA-XPO-1 protein; contains similarity to Pfam domains PF03810 (Importin-beta N-terminal domain), PF08389 (Exportin 1-like protein), PF08767 (CRM1 C terminal), PF18777 (Chromosome region maintenance or exportin repeat), PF18784 (CRM1 / Exportin repeat 2), PF18787 (CRM1 / Exportin repeat 3); contains similarity to Interpro domains IPR040485 (Exportin-1, repeat 3), IPR001494 (Importin-beta, N-terminal domain), IPR014877 (Exportin-1, C-terminal), IPR041123 (Chromosome region maintenance repeat), IPR013598 (Exportin-1/Importin-beta-like), IPR011989 (Armadillo-like helical), IPR041235 (Exportin-1, repeat 2), IPR016024 (Armadillo-type fold) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00099075 | ||||
| Corresponding_transcript | PPA09521.1 | |||||
| Corresponding_protein | PP65329 | |||||
| Corresponding_oligo_set | GPL14372_Probes_90960 | |||||
| GPL14372_Probes_90961 | ||||||
| GPL14372_Probes_90962 | ||||||
| Microarray_results | GPL14372_Probes_90960 | |||||
| GPL14372_Probes_90961 | ||||||
| GPL14372_Probes_90962 | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.95905 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S2844-35.35 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
