WormBase Tree Display for CDS: PPA09580
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PPA09580 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 716 | |||
760 | 891 | |||||
956 | 1153 | |||||
1200 | 1391 | |||||
1468 | 1593 | |||||
1764 | 1956 | |||||
2174 | 2290 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S328-10.94 | ||
DB_remark | contains similarity to Pfam domain PF13920 (Zinc finger, C3HC4 type (RING finger)); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00099134 | ||||
Corresponding_transcript | PPA09580.1 | |||||
Corresponding_protein | PP73990 | |||||
Corresponding_oligo_set | GPL14372_Probes_16108 | |||||
GPL14372_Probes_16109 | ||||||
GPL14372_Probes_16110 | ||||||
GPL14372_Probes_16111 | ||||||
GPL14372_Probes_16113 | ||||||
Microarray_results | GPL14372_Probes_16108 | |||||
GPL14372_Probes_16109 | ||||||
GPL14372_Probes_16110 | ||||||
GPL14372_Probes_16111 | ||||||
GPL14372_Probes_16113 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S328-10.94 | Curator_confirmed | WBPerson4055 | |||
Method | curated |