WormBase Tree Display for CDS: PPA09873
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PPA09873 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (38) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S259-10.63 | ||
DB_remark | contains similarity to Pfam domains PF00089 (Trypsin), PF03761 (Nematode trypsin-6-like family), PF05978 (Ion channel regulatory protein UNC-93); contains similarity to Interpro domains IPR043504 (Peptidase S1, PA clan, chymotrypsin-like fold), IPR005514 (Chymotrypsin family Peptidase-S1), IPR036259 (MFS transporter superfamily), IPR010291 (Ion channel regulatory protein, UNC-93), IPR001254 (Serine proteases, trypsin domain), IPR009003 (Peptidase S1, PA clan) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00099427 | ||||
Corresponding_transcript | PPA09873.1 | |||||
Corresponding_protein | PP58635 | |||||
Corresponding_oligo_set | GPL14372_Probes_15506 | |||||
GPL14372_Probes_15507 | ||||||
Microarray_results | GPL14372_Probes_15506 | |||||
GPL14372_Probes_15507 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S259-10.63 | Curator_confirmed | WBPerson4055 | |||
Method | curated |