WormBase Tree Display for CDS: PPA09891
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| PPA09891 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (30) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S259-10.36 | ||
| TREEFAM | TREEFAM_ID | TF314694 | ||||
| DB_remark | PPA-UMPS-1 protein; contains similarity to Pfam domains PF00156 (Phosphoribosyl transferase domain), PF00215 (Orotidine 5'-phosphate decarboxylase / HUMPS family), PF01026 (TatD related DNase), PF04568 (Mitochondrial ATPase inhibitor, IATP); contains similarity to Interpro domains IPR032466 (Metal-dependent hydrolase), IPR004467 (Orotate phosphoribosyl transferase domain), IPR013785 (Aldolase-type TIM barrel), IPR014732 (Orotidine 5'-phosphate decarboxylase), IPR011060 (Ribulose-phosphate binding barrel), IPR007648 (Mitochondrial ATPase inhibitor), IPR001754 (Orotidine 5'-phosphate decarboxylase domain), IPR001130 (3'-5' ssDNA/RNA exonuclease TatD-like), IPR029057 (Phosphoribosyltransferase-like), IPR000836 (Phosphoribosyltransferase domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00099445 | ||||
| Corresponding_transcript | PPA09891.1 | |||||
| Corresponding_protein | PP67845 | |||||
| Corresponding_oligo_set (11) | ||||||
| Matching_cDNA | FE940519 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results (11) | ||||||
| RNASeq_FPKM | WBls:0000032 | 48.1463 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 18.9528 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S259-10.36 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
