WormBase Tree Display for CDS: PPA09921
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| PPA09921 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (128) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S498-0.87 | ||
| DB_remark | contains similarity to Pfam domains PF00052 (Laminin B (Domain IV)), PF00053 (Laminin EGF domain), PF00054 (Laminin G domain), PF00057 (Low-density lipoprotein receptor domain class A), PF02210 (Laminin G domain), PF07679 (Immunoglobulin I-set domain), PF13895 (Immunoglobulin domain), PF13927 (Immunoglobulin domain); contains similarity to Interpro domains IPR036055 (LDL receptor-like superfamily), IPR000034 (Laminin IV), IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR002049 (Laminin-type EGF domain), IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR007110 (Immunoglobulin-like domain), IPR003599 (Immunoglobulin subtype), IPR009030 (Growth factor receptor cysteine-rich domain superfamily), IPR003598 (Immunoglobulin subtype 2), IPR000742 (EGF-like domain), IPR013098 (Immunoglobulin I-set), IPR001791 (Laminin G domain), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Artificial_intron | Low_quality_sequence | |||||
| End_not_found | ||||||
| Visible | Gene | WBGene00099475 | ||||
| Corresponding_transcript | PPA09921.1 | |||||
| Corresponding_protein | PP54333 | |||||
| Corresponding_oligo_set (34) | ||||||
| Matching_cDNA | FE939876 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results (34) | ||||||
| RNASeq_FPKM | WBls:0000032 | 8.16317 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 4.07312 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S498-0.87 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
