WormBase Tree Display for CDS: PPA09952
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| PPA09952 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (53) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-23.12 | ||
| DB_remark | PPA-CPT-1 protein; contains similarity to Pfam domains PF00194 (Eukaryotic-type carbonic anhydrase), PF00755 (Choline/Carnitine o-acyltransferase), PF13532 (2OG-Fe(II) oxygenase superfamily), PF16484 (Carnitine O-palmitoyltransferase N-terminus); contains similarity to Interpro domains IPR000542 (Acyltransferase ChoActase/COT/CPT), IPR039551 (Choline/carnitine acyltransferase domain), IPR032476 (Carnitine O-palmitoyltransferase, N-terminal), IPR037151 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily), IPR036398 (Alpha carbonic anhydrase domain superfamily), IPR042232 (), IPR042231 (Choline/Carnitine o-acyltransferase, domain 2), IPR001148 (Alpha carbonic anhydrase domain), IPR027450 (Alpha-ketoglutarate-dependent dioxygenase AlkB-like) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00099506 | ||||
| Corresponding_transcript | PPA09952.1 | |||||
| Corresponding_protein | PP61455 | |||||
| Corresponding_oligo_set (12) | ||||||
| Microarray_results (12) | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.04352 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 7.23965 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-23.12 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
