WormBase Tree Display for CDS: PPA09973
expand all nodes | collapse all nodes | view schema
| PPA09973 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (38) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S2842-7.0 | ||
| DB_remark | contains similarity to Pfam domains PF00136 (DNA polymerase family B), PF03104 (DNA polymerase family B, exonuclease domain), PF14260 (C4-type zinc-finger of DNA polymerase delta); contains similarity to Interpro domains IPR042087 (DNA polymerase family B, thumb domain), IPR025687 (C4-type zinc-finger of DNA polymerase delta), IPR043502 (DNA/RNA polymerase superfamily), IPR006133 (DNA-directed DNA polymerase, family B, exonuclease domain), IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR006172 (DNA-directed DNA polymerase, family B), IPR006134 (DNA-directed DNA polymerase, family B, multifunctional domain), IPR023211 (DNA polymerase, palm domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00099527 | ||||
| Corresponding_transcript | PPA09973.1 | |||||
| Corresponding_protein | PP58268 | |||||
| Corresponding_oligo_set | GPL14372_Probes_14481 | |||||
| GPL14372_Probes_14482 | ||||||
| GPL14372_Probes_14483 | ||||||
| Microarray_results | GPL14372_Probes_14481 | |||||
| GPL14372_Probes_14482 | ||||||
| GPL14372_Probes_14483 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S2842-7.0 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
