WormBase Tree Display for CDS: PPA10161
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PPA10161 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 102 | |||
314 | 382 | |||||
590 | 688 | |||||
1191 | 1307 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-3.32 | ||
DB_remark | contains similarity to Pfam domain PF00011 (Hsp20/alpha crystallin family); contains similarity to Interpro domains IPR002068 (Alpha crystallin/Hsp20 domain), IPR008978 (HSP20-like chaperone), IPR001436 (Alpha crystallin/Small heat shock protein, animal type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00099715 | ||||
Corresponding_transcript | PPA10161.1 | |||||
Corresponding_protein | PP28512 | |||||
Corresponding_oligo_set | GPL14372_Probes_82388 | |||||
Microarray_results | GPL14372_Probes_82388 | |||||
RNASeq_FPKM | WBls:0000032 | 17.4982 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-3.32 | Curator_confirmed | WBPerson4055 | |||
Method | curated |