WormBase Tree Display for CDS: PPA10354
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PPA10354 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (40) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-0.65 | ||
DB_remark | contains similarity to Pfam domains PF00929 (Exonuclease), PF02460 (Patched family); contains similarity to Interpro domains IPR003392 (Protein patched/dispatched), IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR013520 (Exonuclease, RNase T/DNA polymerase III) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00099908 | ||||
Corresponding_transcript | PPA10354.1 | |||||
Corresponding_protein | PP70332 | |||||
Corresponding_oligo_set | GPL14372_Probes_48861 | |||||
GPL14372_Probes_48862 | ||||||
GPL14372_Probes_48863 | ||||||
GPL14372_Probes_48864 | ||||||
GPL14372_Probes_48865 | ||||||
GPL14372_Probes_48866 | ||||||
GPL14372_Probes_48867 | ||||||
GPL14372_Probes_48868 | ||||||
Matching_cDNA | FE932990 | Inferred_automatically | transcript_builder.pl | |||
FE931968 | Inferred_automatically | transcript_builder.pl | ||||
FG097756 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_48861 | |||||
GPL14372_Probes_48862 | ||||||
GPL14372_Probes_48863 | ||||||
GPL14372_Probes_48864 | ||||||
GPL14372_Probes_48865 | ||||||
GPL14372_Probes_48866 | ||||||
GPL14372_Probes_48867 | ||||||
GPL14372_Probes_48868 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.70924 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 26.4016 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-0.65 | Curator_confirmed | WBPerson4055 | |||
Method | curated |