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WormBase Tree Display for CDS: PPA10377

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Name Class

PPA10377SMapS_parentSequencePPA_ChrI
StructureSource_exons112
134256
367444
616861
9091041
12861794
18621996
DB_infoDatabasepristionchus.orgcdsgene-UMM-S71-2.50
TREEFAMTREEFAM_IDTF314343
DB_remarkPPA-EEF-1G protein; contains similarity to Pfam domains PF00043 (Glutathione S-transferase, C-terminal domain), PF00647 (Elongation factor 1 gamma, conserved domain); contains similarity to Interpro domains IPR001662 (Elongation factor 1B gamma, C-terminal), IPR004046 (Glutathione S-transferase, C-terminal), IPR036433 (Elongation factor EF1B gamma, C-terminal domain superfamily), IPR036282 (Glutathione S-transferase, C-terminal domain superfamily), IPR036249 (Thioredoxin-like superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00099931
Corresponding_transcriptPPA10377.1
Corresponding_proteinPP69701
Corresponding_oligo_setGPL14372_Probes_48952
GPL14372_Probes_48954
GPL14372_Probes_48955
Matching_cDNAEB183999Inferred_automaticallytranscript_builder.pl
AW052728Inferred_automaticallytranscript_builder.pl
FE933934Inferred_automaticallytranscript_builder.pl
AW097034Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_48952
GPL14372_Probes_48954
GPL14372_Probes_48955
RNASeq_FPKMWBls:000003262.9464From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010171.246From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S71-2.50Curator_confirmedWBPerson4055
Methodcurated