WormBase Tree Display for CDS: PPA10377
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PPA10377 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 12 | |||
134 | 256 | |||||
367 | 444 | |||||
616 | 861 | |||||
909 | 1041 | |||||
1286 | 1794 | |||||
1862 | 1996 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S71-2.50 | ||
TREEFAM | TREEFAM_ID | TF314343 | ||||
DB_remark | PPA-EEF-1G protein; contains similarity to Pfam domains PF00043 (Glutathione S-transferase, C-terminal domain), PF00647 (Elongation factor 1 gamma, conserved domain); contains similarity to Interpro domains IPR001662 (Elongation factor 1B gamma, C-terminal), IPR004046 (Glutathione S-transferase, C-terminal), IPR036433 (Elongation factor EF1B gamma, C-terminal domain superfamily), IPR036282 (Glutathione S-transferase, C-terminal domain superfamily), IPR036249 (Thioredoxin-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00099931 | ||||
Corresponding_transcript | PPA10377.1 | |||||
Corresponding_protein | PP69701 | |||||
Corresponding_oligo_set | GPL14372_Probes_48952 | |||||
GPL14372_Probes_48954 | ||||||
GPL14372_Probes_48955 | ||||||
Matching_cDNA | EB183999 | Inferred_automatically | transcript_builder.pl | |||
AW052728 | Inferred_automatically | transcript_builder.pl | ||||
FE933934 | Inferred_automatically | transcript_builder.pl | ||||
AW097034 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_48952 | |||||
GPL14372_Probes_48954 | ||||||
GPL14372_Probes_48955 | ||||||
RNASeq_FPKM | WBls:0000032 | 62.9464 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 71.246 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S71-2.50 | Curator_confirmed | WBPerson4055 | |||
Method | curated |