WormBase Tree Display for CDS: PPA10412
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PPA10412 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (62) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S604-0.8 | ||
DB_remark | PPA-ANP-1 protein; contains similarity to Pfam domains PF01433 (Peptidase family M1 domain), PF11838 (ERAP1-like C-terminal domain), PF17900 (Peptidase M1 N-terminal domain); contains similarity to Interpro domains IPR014782 (Peptidase M1, membrane alanine aminopeptidase), IPR042097 (Aminopeptidase N-like , N-terminal domain superfamliy), IPR024571 (ERAP1-like C-terminal domain), IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
End_not_found | ||||||
Visible | Gene | WBGene00099966 | ||||
Corresponding_transcript | PPA10412.1 | |||||
Corresponding_protein | PP70542 | |||||
Corresponding_oligo_set (11) | ||||||
Matching_cDNA | FG104859 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 10.8775 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 20.2821 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S604-0.8 | Curator_confirmed | WBPerson4055 | |||
Method | curated |