WormBase Tree Display for CDS: PPA10464
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PPA10464 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (67) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-24.126 | ||
DB_remark | PPA-AMX-1 protein; contains similarity to Pfam domains PF01593 (Flavin containing amine oxidoreductase), PF04099 (Sybindin-like family), PF04433 (SWIRM domain); contains similarity to Interpro domains IPR036188 (FAD/NAD(P)-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR011012 (Longin-like domain superfamily), IPR007233 (Trafficking protein particle complex subunit), IPR002937 (Amine oxidase), IPR009057 (Homeobox-like domain superfamily), IPR007526 (SWIRM domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00100018 | ||||
Corresponding_transcript | PPA10464.1 | |||||
Corresponding_protein | PP59604 | |||||
Corresponding_oligo_set | GPL14372_Probes_20348 | |||||
GPL14372_Probes_20349 | ||||||
GPL14372_Probes_20350 | ||||||
GPL14372_Probes_20351 | ||||||
GPL14372_Probes_20352 | ||||||
GPL14372_Probes_72203 | ||||||
GPL14372_Probes_72204 | ||||||
GPL14372_Probes_72205 | ||||||
GPL14372_Probes_72207 | ||||||
Microarray_results | GPL14372_Probes_20348 | |||||
GPL14372_Probes_20349 | ||||||
GPL14372_Probes_20350 | ||||||
GPL14372_Probes_20351 | ||||||
GPL14372_Probes_20352 | ||||||
GPL14372_Probes_72203 | ||||||
GPL14372_Probes_72204 | ||||||
GPL14372_Probes_72205 | ||||||
GPL14372_Probes_72207 | ||||||
RNASeq_FPKM | WBls:0000032 | 11.096 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.58616 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S207-24.126 | Curator_confirmed | WBPerson4055 | |||
Method | curated |