WormBase Tree Display for CDS: PPA11260
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| PPA11260 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (21) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S495-0.62 | ||
| TREEFAM | TREEFAM_ID | TF314077 | ||||
| DB_remark | PPA-NADK-2 protein; contains similarity to Pfam domains PF01513 (ATP-NAD kinase N-terminal domain), PF06090 (Inositol-pentakisphosphate 2-kinase); contains similarity to Interpro domains IPR017438 (Inorganic polyphosphate/ATP-NAD kinase, N-terminal), IPR009286 (Inositol-pentakisphosphate 2-kinase), IPR002504 (NAD kinase), IPR016064 (NAD kinase/diacylglycerol kinase-like domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00100814 | ||||
| Corresponding_transcript | PPA11260.1 | |||||
| Corresponding_protein | PP70740 | |||||
| Corresponding_oligo_set | GPL14372_Probes_17615 | |||||
| GPL14372_Probes_17616 | ||||||
| GPL14372_Probes_17617 | ||||||
| GPL14372_Probes_17618 | ||||||
| GPL14372_Probes_17619 | ||||||
| Matching_cDNA | EB183926 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_17615 | |||||
| GPL14372_Probes_17616 | ||||||
| GPL14372_Probes_17617 | ||||||
| GPL14372_Probes_17618 | ||||||
| GPL14372_Probes_17619 | ||||||
| RNASeq_FPKM | WBls:0000032 | 6.54977 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 17.4042 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S495-0.62 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
