WormBase Tree Display for CDS: PPA11269
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PPA11269 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (33) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S495-0.9 | ||
DB_remark | PPA-CATP-4 protein; contains similarity to Pfam domains PF00122 (E1-E2 ATPase), PF00689 (Cation transporting ATPase, C-terminus), PF00690 (Cation transporter/ATPase, N-terminus), PF00702 (haloacid dehalogenase-like hydrolase), PF13246 (Cation transport ATPase (P-type)); contains similarity to Interpro domains IPR023298 (P-type ATPase, transmembrane domain superfamily), IPR036412 (HAD-like superfamily), IPR005775 (P-type ATPase subfamily IIC, subunit alpha), IPR008250 (P-type ATPase, A domain superfamily), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR001757 (P-type ATPase), IPR023299 (P-type ATPase, cytoplasmic domain N), IPR023214 (HAD superfamily), IPR006068 (Cation-transporting P-type ATPase, C-terminal) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00100823 | ||||
Corresponding_transcript | PPA11269.1 | |||||
Corresponding_protein | PP70449 | |||||
Corresponding_oligo_set | GPL14372_Probes_17562 | |||||
GPL14372_Probes_17563 | ||||||
GPL14372_Probes_17564 | ||||||
GPL14372_Probes_17565 | ||||||
GPL14372_Probes_17566 | ||||||
GPL14372_Probes_17567 | ||||||
GPL14372_Probes_17568 | ||||||
GPL14372_Probes_17569 | ||||||
GPL14372_Probes_17570 | ||||||
GPL14372_Probes_17571 | ||||||
Microarray_results | GPL14372_Probes_17562 | |||||
GPL14372_Probes_17563 | ||||||
GPL14372_Probes_17564 | ||||||
GPL14372_Probes_17565 | ||||||
GPL14372_Probes_17566 | ||||||
GPL14372_Probes_17567 | ||||||
GPL14372_Probes_17568 | ||||||
GPL14372_Probes_17569 | ||||||
GPL14372_Probes_17570 | ||||||
GPL14372_Probes_17571 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.44796 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S495-0.9 | Curator_confirmed | WBPerson4055 | |||
Method | curated |